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Creators/Authors contains: "Newton, Jan"

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  1. Ocean acidification (OA), an alteration of seawater chemistry caused primarily by anthropogenic carbon emissions, is a global issue. However, the local expression of OA can vary widely in nearshore waters around the world. This is due to localized factors such as river input, eutrophication, topography, location (e.g., temperature), and sensitivity of local species. Human impacts from OA also vary depending on societal uses of the ocean and its resources. Managers, policy­makers, and governments need to understand the status and susceptibility of their regions in order to make effective decisions and drive policy. In the early 2000s, scientists recognized the need for a global ocean acidification observing system and called for a coordinated approach to effectively assess global as well as local status with consistent methods. As a result, the Global Ocean Acidification Observing Network (GOA-ON) was formed in 2012 with three goals: (1) to improve understanding of global OA conditions, (2) to improve understanding of ecosystem responses to OA, and (3) to acquire and exchange data and knowledge necessary to optimize modeling of OA and its impacts (Newton et al., 2015; Tilbrook et al., 2019). 
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    Free, publicly-accessible full text available January 1, 2026
  2. The Backyard Buoys project (https://backyardbuoys.org/) enables Indigenous and coastal communities to gather and use wave data to enhance their blue economies and hazard protections. These communities have been historically underserved, and climate change is making weather and wave predictability even harder. Leveraging low-cost, scalable marine technology in partnership with regional ocean observing networks, Backyard Buoys offers a system for community-managed ocean buoys and data access to complement Indigenous Knowledge. These innovations include a sustainable process for community-led implementation and stewardship of affordable ocean buoys along with co-designed and co-produced mobile and web-based applications (apps) that render data easy to access and understand. 
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    Free, publicly-accessible full text available January 1, 2026
  3. ABSTRACT Bivalve transmissible neoplasia (BTN) is one of three known types of naturally transmissible cancer— cancers in which the whole cancer cells move from individual to individual, spreading through natural populations. BTN is a lethal leukemia-like cancer that has been observed throughout soft-shell clam (Mya arenaria) populations on the east coast of North America, with two distinct sublineages circulating at low enzootic levels in New England, USA, and Prince Edward Island, Canada. Major cancer outbreaks likely due toMya arenariaBTN (MarBTN) were reported in 1980s and the 2000s and the disease has been observed since the 1970s, but it has not been observed in populations of this clam species on the US west coast. In 2022, we collected soft-shell clams from several sites in Puget Sound, Washington, USA, and unexpectedly found high prevalence of BTN in two sites (Triangle Cove on Camano Island and near Stanwood in South Skagit Bay). Prevalence of BTN increased in subsequent years, reaching >75% in both sites in 2024, while it was not observed in other sites, suggesting the early stages of a severe disease outbreak following recent introduction. We observed that these cancer cells contain several somatic transposing insertion sites found only in the USA-sublineage of MarBTN, showing that it likely was recently transplanted from New England to this location. We then developed a sensitive environmental DNA (eDNA) assay, using qPCR to target somatic mutations in the MarBTN mitogenome, and showed that MarBTN can be detected in seawater at Triangle Cove, as well as several kilometers outside of the cove. We then used this assay to survey 50 sites throughout Puget Sound, confirming that the disease can be detected at high levels at Triangle Cove and South Skagit Bay, and showing that it extends beyond these known sites. However, while normal soft-shell clam mtDNA was widely detected, MarBTN was undetectable throughout most of Puget Sound and currently remains limited to the South Skagit Bay area and north Port Susan. These results identify a previously unknown severe outbreak of a transmissible cancer due to long-distance transplantation of disease from another ocean, and they demonstrate the utility of eDNA methods to track the spread of BTN through the environment. 
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    Free, publicly-accessible full text available December 7, 2025
  4. Dias, João Miguel (Ed.)
    The northern portion of Washington’s outer coast—known locally as the Olympic coast—is a dynamic region characterized by seasonal upwelling that predominates during summer interrupted by occasional periods of downwelling. We examined spring-to-fall water temperature records collected along this coast from 2001–2015 from April to October at four nearshore locations (Cape Elizabeth to Makah Bay) that span one degree of latitude and are located within 15 km of the shore. When compared against a long-term climatology created for 2001–2013, seven-day smoothed temperature anomalies of up to 4.5°C at 40 m depth during 2014 and 2015 show short-term warm events lasting 10–20 days. These periods of warming occurred within the well documented marine heatwave in the Northeast Pacific and were about twice the seasonal temperature range in the climatology at that depth. These warm events were strongly correlated with periods of northward long-shore winds and upper ocean currents, consistent with what is expected for the response to downwelling-favorable winds. While our focusa prioriwas on 2014 and 2015, we also found large positive temperature events in 2013, which were potentially related to the early stage of the marine heatwave, and in 2011, which did not have a documented marine heatwave. This indicates that near-shore short-term warm events occur during periods of large-scale offshore marine heatwave events, but also can occur in the absence of a large-scale marine heatwave event when downwelling-favorable winds occur during the summer/early fall. 
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  5. Abstract. Global projections for ocean conditions in 2100 predict that the North Pacific will experience some of the largest changes. Coastal processes that drive variability in the region can alter these projected changes but are poorly resolved by global coarse-resolution models. We quantify the degree to which local processes modify biogeochemical changes in the eastern boundary California Current System (CCS) using multi-model regionally downscaled climate projections of multiple climate-associated stressors (temperature, O2, pH, saturation state (Ω), and CO2). The downscaled projections predict changes consistent with the directional change from the global projections for the same emissions scenario. However, the magnitude and spatial variability of projected changes are modified in the downscaled projections for carbon variables. Future changes in pCO2 and surface Ω are amplified, while changes in pH and upper 200 m Ω are dampened relative to the projected change in global models. Surface carbon variable changes are highly correlated to changes in dissolved inorganic carbon (DIC), pCO2 changes over the upper 200 m are correlated to total alkalinity (TA), and changes at the bottom are correlated to DIC and nutrient changes. The correlations in these latter two regions suggest that future changes in carbon variables are influenced by nutrient cycling, changes in benthic–pelagic coupling, and TA resolved by the downscaled projections. Within the CCS, differences in global and downscaled climate stressors are spatially variable, and the northern CCS experiences the most intense modification. These projected changes are consistent with the continued reduction in source water oxygen; increase in source water nutrients; and, combined with solubility-driven changes, altered future upwelled source waters in the CCS. The results presented here suggest that projections that resolve coastal processes are necessary for adequate representation of the magnitude of projected change in carbon stressors in the CCS. 
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  6. Oceanic uptake of anthropogenic carbon dioxide (CO 2 ) from the atmosphere has changed ocean biogeochemistry and threatened the health of organisms through a process known as ocean acidification (OA). Such large-scale changes affect ecosystem functions and can have impacts on societal uses, fisheries resources, and economies. In many large estuaries, anthropogenic CO 2 -induced acidification is enhanced by strong stratification, long water residence times, eutrophication, and a weak acid–base buffer capacity. In this article, we review how a variety of processes influence aquatic acid–base properties in estuarine waters, including coastal upwelling, river–ocean mixing, air–water gas exchange, biological production and subsequent aerobic and anaerobic respiration, calcium carbonate (CaCO 3 ) dissolution, and benthic inputs. We emphasize the spatial and temporal dynamics of partial pressure of CO 2 ( pCO 2 ), pH, and calcium carbonate mineral saturation states. Examples from three large estuaries—Chesapeake Bay, the Salish Sea, and Prince William Sound—are used to illustrate how natural and anthropogenic processes and climate change may manifest differently across estuaries, as well as the biological implications of OA on coastal calcifiers. 
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  7. Abstract. Ship-based time series, some now approaching over 3 decades long, are critical climate records that have dramatically improved our ability to characterize natural and anthropogenic drivers of ocean carbon dioxide (CO2) uptake and biogeochemical processes. Advancements in autonomous marine carbon sensors and technologies over the last 2 decades have led to the expansion of observations at fixed time series sites, thereby improving the capability of characterizing sub-seasonal variability in the ocean. Here, we present a data product of 40 individual autonomous moored surface ocean pCO2 (partial pressure of CO2) time series established between 2004 and 2013, 17 also include autonomous pH measurements. These time series characterize a wide range of surface ocean carbonate conditions in different oceanic (17 sites), coastal (13 sites), and coral reef (10 sites) regimes. A time of trend emergence (ToE) methodology applied to the time series that exhibit well-constrained daily to interannual variability and an estimate of decadal variability indicates that the length of sustained observations necessary to detect statistically significant anthropogenic trends varies by marine environment. The ToE estimates for seawater pCO2 and pH range from 8 to 15 years at the open ocean sites, 16 to 41 years at the coastal sites, and 9 to 22 years at the coral reef sites. Only two open ocean pCO2 time series, Woods Hole Oceanographic Institution Hawaii Ocean Time-series Station (WHOTS) in the subtropical North Pacific and Stratus in the South Pacific gyre, have been deployed longer than the estimated trend detection time and, for these, deseasoned monthly means show estimated anthropogenic trends of 1.9±0.3 and 1.6±0.3 µatm yr−1, respectively. In the future, it is possible that updates to this product will allow for the estimation of anthropogenic trends at more sites; however, the product currently provides a valuable tool in an accessible format for evaluating climatology and natural variability of surface ocean carbonate chemistry in a variety of regions. Data are available at https://doi.org/10.7289/V5DB8043 and https://www.nodc.noaa.gov/ocads/oceans/Moorings/ndp097.html (Sutton et al., 2018). 
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